Publications

In Press
  • I. Deuzing, C. Charpentier, D. Wright, S. Matheron, J. Paton, D. F., D. Vijver, P. V. Coveney, D. Descamps, ANRS CO5 HIV-2 cohort, C. Boucher, and N. Beerens, "Mutation V111I in HIV-2 reverse transcriptase increases the fitness of the nucleoside analogue resistant K65R and Q151M viruses", Journal of Virology (2014), In Press
  • G. Davies, T. Krüger, P. V. Coveney, and J. Harting, "Detachment Energies of Spheroidal Particles from Fluid-Fluid Interfaces", Journal of Chemical Physics (2014), In Press
  • J. Marés, L.Shamardin, G. Weiler, A. Anguita, S. Sfakianakis, E. Neri, S. J. Zasada, N. Graf, and P. V. Coveney, “p-medicine: A Medical Informatics Platform for Integrated Large Scale Heterogeneous Patient Data”, (2014) AMIA Annu Symp Proc (In Press)
2014
  • T. Krüger, D. Holmes and P. V. Coveney, "Deformability-based red blood cell separation in deterministic lateral displacement devices - a simulation study", Biomicrofluidics, 8, 054114 (2014), DOI: 10.1063/1.4897913
  • S. Karabasov, D. Nerukh, A. Hoekstra, B. Chopard and P. V. Coveney, "Multiscale systems in fluids and soft matter: approaches, numerics, and applications", Philosophical Transactions of the Royal Society of London Series A, Theme Issue, Volume 372, Issue 2021, 06 August 2014, ISBN: 978-1-78252-080-1
  • J. Borgdorff, M. Ben Belgacem, C. Bona-Casas, L. Fazendeiro, D. Groen, O. Hoenen, A. Mizeranschi, J. L. Suter, D. Coster, P. V. Coveney, W. Dubitzky, A. G. Hoekstra, P. Strand, and B. Chopard, "Performance of distributed multiscale simulations", Phil. Trans. R. Soc. A., 372, 20130407 (2014), DOI: 10.1098/rsta.2013.0407
  • S. Karabasov, D. Nerukh, A. Hoekstra, B. Chopard, and P. V. Coveney, "Introduction: Multiscale modelling: approaches and challenges", Phil. Trans. R. Soc. A., 372, 20130390 (2014), DOI: 10.1098/rsta.2013.0390
  • A. Hoekstra, B. Chopard, and P. V. Coveney, "Discussion: Multiscale modelling and simulation: a position paper", Phil. Trans. R. Soc. A., 372, 20130377 (2014), DOI: 10.1098/rsta.2013.0377
  • G. B. Davies, T. Krueger, P. V. Coveney, J. Harting, F. Bresme, "Assembling Ellipsoidal Particles at Fluid Interfaces using Switchable Dipolar Capillary Interactions", Advanced Materials, 26 (39), 6800 (2014), DOI: 10.1002/adma.201402419
  • G. B. Davies, T. Krueger, P. V. Coveney, J. Harting and F. Bresme, "Interface Deformations Affect the Orientation Transition of Magnetic Ellipsoidal Particles Adsorbed at Fluid-Fluid Interfaces", Soft Matter, 10, 6742 (2014) DOI: 10.1039/C4SM01124D
  • M. O. Bernabeu, M. Jones, J. H. Nielsen, T. Krüger, R. Nash, D. Groen, S. Schmieschek, J. Hetherington, H. Gerhardt, C. A. Franco, P. V. Coveney, "Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis", Journal of the Royal Society Interface, 11 (99), 20140543 (2014), DOI: 10.1098/​rsif.2014.0543
  • U. D. Schiller, "A unified operator splitting approach for multi-scale fluid–particle coupling in the lattice Boltzmann method", Computer Physics Communications, 185 (10), 2586–2597 (2014) DOI: 10.1016/j.cpc.2014.06.005
  • J. Fleury, U. D. Schiller, S. Thutupalli, G. Gompper, R. Seemann, "Mode coupling of phonons in a dense one-dimensional microfluidic crystal", New J. Phys., 16, 063029 (2014), DOI: 10.1088/1367-2630/16/6/063029
  • P. V. Coveney, V. Díaz-Zuccarini, P. Hunter, and M. Viceconti, "Computational Biomedicine", Oxford University Press, (2014)
  • D. Groen, S. Zasada, P. V. Coveney, "Survey of Multiscale and Multiphysics Applications and Communities," Computing in Science & Engineering, 16 (2), 34 - 43, (2014), DOI: 10.1109/MCSE.2013.47
  • J. Borgdorff, M. Mamonski, B. Bosak, K. Kurowski, M. B. Belgacem, B. Chopard, D. Groen, P. V Coveney, A. G. Hoekstra, "Distributed Multiscale Computing with MUSCLE 2, the Multiscale Coupling Library and Environment", Journal of Computational Science (2014), Available Online, DOI: 10.1016/j.jocs.2014.04.004.
  • R. W. Nash, H. B. Carver, M. O. Bernabeu, J. Hetherington, D. Groen, T. Krueger and P. V. Coveney, "Choice of boundary condition for lattice Boltzmann simulation of moderate-Reynolds-number flow in complex domains", Physical Review E, 89, 023303, (2014), DOI: 10.1103/PhysRevE.89.023303
  • D. Wright, B. Hall, O. Kenway, S. Jha, P. V. Coveney, "Computing Clinically Relevant Binding Free Energies of HIV-1 Protease Inhibitors", Journal of Chemical Theory and Computation, (2014), 10 (3), 1228–1241 DOI: 10.1021/ct4007037
  • H. S. C. Martin, S. Jha, P. V. Coveney, "Comparative Analysis of Nucleotide Translocation through Protein Nanopores using Steered Molecular Dynamics and an Adaptive Biasing Force", Journal of Computational Chemistry, (2014), 35 (9), 692–702, DOI: 10.1002/jcc.23525
  • S. J. Zasada, D. Chang, A. H. Haidar, P. V. Coveney, "Flexible Composition and Execution of Large Scale Applications on Distributed e-Infrastructures", Journal of Computational Science, 5 (2014), pp. 51-62, DOI: 10.1016/j.jocs.2013.10.009
2013
  • T. Ishiyama, S. Rieder, J. Makino, S. Portegies Zwart, D. Groen, K. Nitadori, C. de Laat, S. McMillan, K. Hiraki, and S. Harfst, "The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos", Astrophysical Journal (2013), 767, 146, DOI: DOI: 10.1088/0004-637X/767/2/146
  • J. Borgdorff, M. Mamonski, B. Bosak, D. Groen, M. Ben Belgacem, K. Kurowski, A.G. Hoekstra, "Multiscale computing with the multiscale modeling library and runtime environment", International Conference on Computational Science 2013, (2013), 18, 1097–1105, DOI: DOI: 10.1016/j.procs.2013.05.275
  • M. Kunze, D. Wright, N. Werbeck, J. Kirkpatrick, P. V. Coveney, D. Hansen, "Loop Interactions and Dynamics Tune the Enzymatic Activity of the Human Histone Deacetylase 8", Journal of the American Chemical Society, (2013), 135 (47), pp 17862–17868, DOI: 10.1021/ja408184x
  • K. Rycerz, E. Ciepiela, G. Dyk, D. Groen, T. Gubala, D. Harezlak, M. Pawlik, J. Suter, S. Zasada, P. Coveney, M. Bubak, "Support for Multiscale Simulations with Molecular Dynamics", International Conference on Computational Science 2013, (2013), 18, 1116–1125, DOI: DOI: 10.1016/j.procs.2013.05.277
  • D. Groen, J. Hetherington, H. B. Carver, R. W. Nash, M. O. Bernabeu, P. V. Coveney, "Analyzing and Modeling the Performance of the HemeLB Lattice-Boltzmann Simulation Environment", Journal of Computational Science, (2013), 4 (5), 412–422, DOI: 10.1016/j.jocs.2013.03.002
  • O. Henrich , K. Stratford , P. V. Coveney , M. E. Cates , D. Marenduzzo, "Rheology of Cubic Blue Phases", Soft Matter, (2013), 9, 10243-10256, DOI: 10.1039/C3SM50228G
  • D. W. Wright, I. P. Deuzing, P. Flandre, P. van den Eede, M. Govaert, P. V. Coveney et al., "A Polymorphism at Position 400 in the Connection Subdomain of HIV-1 Reverse Transcriptase Affects Sensitivity to NNRTIs and RNaseH Activity", (2013), PLoS ONE 8(10): e74078, DOI: 10.1371/journal.pone.0074078
  • S. Buchsbaum, N. Mitchell, H. S. Martin , M. Wiggin , A. Marziali, P. V. Coveney, Z. S. Siwy, and S. Howorka, "Disentangling Steric and Electrostatic Factors in Nanoscale Transport Through Confined Space", Nano Letters, (2013), 13 (8), pp 3890–3896, DOI: 10.1021/nl401968r
  • D. Lecarpentier, P. Wittenburg, W. Elbers, A. Michelini, R. Kanso, P. V. Coveney, R. Baxter, "EUDAT: A new Cross-Disciplinary Data Infrastructure for Science", International Journal of Digital Curation, 8, 279-287 (2013), DOI: 10.2218/ijdc.v8i1.260
  • B. Könnyű, S. K. Sadiq, T. Turányi, R. Hírmondó, B. Müller, H. Kräusslich, P. V. Coveney, V. Müller, "Gag-Pol Processing during HIV-1 Virion Maturation: A Systems Biology Approach", PLoS Comput Biol 9(6), e1003103, (2013), DOI: 10.1371/journal.pcbi.1003103
  • P. V. Coveney, V. Diaz-Zuccarini, N. Graf, P. Hunter, P. Kohl, J. Tegner and M. Viceconti, "The virtual physiological human: integrative approaches to computational biomedicine", J R Soc Interface Focus Theme Issue, 3 (2), (2013)
  • P, V. Coveney, V. Diaz-Zuccarini, N. Graf, P. Hunter, P. Kohl, J. Tegner and M. Viceconti, "Introduction: Integrative Approaches to Computational Biomedicine", J R Soc Interface Focus, 3 (2), 20130003, (2013), DOI: 10.1098/rsfs.2013.0003
  • M. Bernabeu, R. Nash, D. Groen, H. Carver, J. Hetherington, T. Krueger and P. V Coveney, "Impact of blood rheology on wall shear stress in a model of the middle cerebral artery", J R Soc Interface Focus, 3 (2), 20120094, (2013), DOI: 10.1098/rsfs.2012.0094
  • D. Groen, J. Borgdorff, C. Bona-Casas, J. Hetherington, R. W. Nash, S. J. Zasada, I. Saverchenko, M. Mamonski, K. Kurowski, M. O. Bernabeu, A. G. Hoekstra and P. V. Coveney, "Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations", J R Soc Interface Focus, 3 (2), 20120087, (2013), DOI: 10.1098/rsfs.2012.0087
  • B. Jefferys, I. Nwankwo, E. Neri, D. Chang, L. Shamardin, S. Hänold, N. Graf, N. Forgo and P.V. Coveney, "Navigating legal constraints in clinical data warehousing: a case study in personalised medicine", J R Soc Interface Focus, 3 (2), 20120088, (2013), DOI: 10.1098/rsfs.2012.0088
  • P. Hunter, T. Chapman, P. V. Coveney, B. de Bono, V. Diaz, J. Fenner, A. F. Frangi, P. Harris, R. Hose, P. Kohl, P. Lawford, K. McCormack, M. Mendes, S. Omholt, A. Quarteroni, N. Shublaq, J. Skår, K. Stroetmann, J. Tegner, S. R. Thomas, I. Tollis, I. Tsamardinos, J. H. van Beek and M. Viceconti, "A Vision and Strategy for the VPH: 2012 update", J R Soc Interface Focus, 3 (2), 20130004, (2013), DOI: 10.1098/rsfs.2013.0004
  • C.Z. Christov, A. Lodola, T.G. Karabencheva-Christova, S. Wan, P.V. Coveney, and A.J. Mulholland, "Conformational Effects on the pro-(S) Hydrogen Abstraction Reaction in Cyclooxygenase-1: An Integrated QM/MM and MD Study", Biophysical Journal, 104, (5), L5-L7, (2013), DOI: 10.1016/j.bpj.2013.01.040
  • J. B. Swadling, J. L. Suter, H. C. Greenwell, P. V. Coveney, "Influence of Surface Chemistry and Charge on Mineral-RNA Interactions", Langmuir, 29 (5), pp 1573–1583, (2013), DOI: 10.1021/la303352g
2012
  • J. Suter, D. Groen, L. Kabalan and P. V. Coveney,"Distributed Multiscale Simulations of Clay-Polymer Nanocomposites", MRS Proceedings, 2012 MRS Spring Meeting, Volume 1470, (2012), DOI: 10.1557/opl.2012.1009
  • D. Groen, S. J. Zasada, P. V. Coveney, "Survey of Multiscale and Multiphysics Applications and Communities", CiSE, arXiv:1208.6444v1, (2012), Available Online
  • N. Shublaq, C. Sansom, P. V. Coveney, "Patient-Specific Modelling in Drug Design, Development and Selection Including its Role in Clinical Decision Making", Chemical Biology and Drug Design, 81, 5-12, (2012), DOI: 10.1111/j.1747-0285.2012.01444.x
  • B. A. Hall, D. W. Wright, S. Jha, P. V. Coveney, "Quantized water access to the HIV-1 protease active site as a proposed mechanism for cooperative mutations in drug affinity", Biochemistry, 51(33):6487-9, (2012), DOI: 10.1021/bi300432u
  • S. Wan, P. V. Coveney, "Regulation of JAK2 Activation by Janus Homology 2: Evidence from Molecular Dynamics Simulations", Journal of Chemical Information and Modeling, 52 (11), 2992–3000, (2012), DOI: 10.1021/ci300308g
  • D. W. Wright, S. Wan, N. Shublaq, S. J. Zasada, P. V. Coveney, "From base pair to bedside: molecular simulation and the translation of genomics to personalized medicine", Wiley Interdisciplinary Reviews: Systems Biology and Medicine, (2012), 4:585–598, DOI: 10.1002/wsbm.1186
  • D. W. Wright, K. Sadiq, G. De Fabritiis, P. V. Coveney, "Thumbs down for HIV: Domain level rearrangements do occur in the NNRTI bound HIV-1 Reverse Transcriptase", Journal of the American Chemical Society, Available Online, 134 (31), 12885–12888, (2012), DOI: 10.1021/ja301565k
  • S. Wan, D. Wright, P. V. Coveney, "Mechanism of Drug Efficacy within the Epidermal Growth Factor Receptor Revealed by Microsecond Molecular Dynamics Simulation", Molecular Cancer Therapeutics, 11(11), 2394-400, (2012), DOI: 10.1158/1535-7163.MCT-12-0644-T
  • D. W. Wright, B. A. Hall, P. Kellam and P. V. Coveney, "Global Conformational Dynamics of HIV-1 Reverse Transcriptase Bound to Non-Nucleoside Inhibitors", Biology, 2012, 1(2), 222-244; DOI: 10.3390/biology1020222
  • O. Henrich, K. Stratford, D. Marenduzzo, P.V. Coveney, M.E. Cates, "Confined Cubic Blue Phases under Shear",J. Phys.: Condens. Matter, 24, 284127, DOI: 10.1088/0953-8984/24/28/284127
  • J. Borgdorff, D. Groen, S. Ferlin, I. Saverchenko, J. Suter, A. Hoekstra, P. V. Coveney, "Multiscale Simulations on distributed European e-Infrastructures", inSiDE, Vol. 10, No. 1, Spring 2012
  • P.V. Coveney, J.B. Swadling, J.A.D. Wattis & H.C. Greenwell, "Theory, Modelling & Simulation in Origins of Life Studies", Chem. Soc. Rev., (2012), 2012,41, 5430-5446 DOI: 10.1039/C2CS35018A
  • O. Henrich, K. Stratford, D. Marenduzzo, P.V. Coveney, M.E. Cates, "Rheology of Lamellar Liquid Crystals in Two and Three Dimensions: A Simulation Study", Soft Matter 8, 3817-3831 (2012).
  • J. B. Swadling, P. V. Coveney, and H. C. Greenwell, "Stability of Free and Mineral-Protected Nucleic Acids: Implications for the RNA World", Geochimica et Cosmochimica Acta, (2012) 83, 360–378, DOI: 10.1016/j.gca.2011.12.023
  • D. W. Wright, S. K. Sadiq, and P. V. Coveney, "Thumbs Down: Subdomain Rearrangements in the Drug Bound HIV-1 Reverse Transcriptase", Biophysical Journal, (2012), 102(3), 64a, DOI: 10.1016/j.bpj.2011.11.382
2011
  • Derek Groen, James Suter, Peter Coveney, "Modelling Distributed Multiscale Simulation Performance: An Application to Nanocomposites," esciencew, pp.105-111, 2011 IEEE Seventh International Conference on e-Science Workshops, (2011), DOI: 10.1109/eScienceW.2011.37
  • Derek Groen, Stefan J. Zasada, Peter V. Coveney, "Taxonomy of Multiscale Computing Communities," esciencew, pp.120-127, 2011 IEEE Seventh International Conference on e-Science Workshops, (2011), DOI: 10.1109/eScienceW.2011.11
  • D. Wright and P. V. Coveney, "Resolution of Discordant HIV-1 Protease Resistance Rankings Using Molecular Dynamics Simulations", Journal of Chemical Information and Modeling, (2011), 51(10), 2636-49, DOI: 10.1021/ci200308r
  • S. J. Zasada , T. Wang , A. Haidar , E. Liu, B. Graf, G. Clapworthy, S. Manos, P. V. Coveney, "IMENSE: An e-Infrastructure Environment for Patient Specific Multiscale Modelling and Treatment", Journal of Computational Science, 3, 314-327, (2012), DOI: 10.1016/j.jocs.2011.07.001
  • D. Groen, S. Rieder, S. Portegies Zwart, "High performance cosmological simulations on a grid of supercomputers", INFOCOMP, (2011), arXiv:1109.5559v1.
  • T. Hewer, M. Nekovee, P. V. Coveney, "Universality of Performance Parameters in Vehicular ad hoc Networks", IEEE Communications Letters, (2011), 15 (9), 947 - 949, DOI: 10.1109/LCOMM.2011.062911.110710
  • C. Sansom, M. Mendes, P. V. Coveney, "Modelling the Virtual Physiological Human", BioTechnologia, (2011) 92 (3), 225-229.
  • N. Shublaq, S. Zasada, P. V. Coveney, "Exciting Times in Computational Science", Journal of Computational Science, (2011), 2(4), 315, DOI: 10.1016/j.jocs.2011.11.001
  • P. V Coveney, R. Kenway, R. Perott, D. de Roure, A. Trefethen, D. Groen, N. Shublaq et al., "Strategy for the UK Research Computing Ecosystem", (2011), Available Online.
  • K. Sadiq, B. Konnyu, V. Muller, P. V. Coveney, "Reaction Kinetics of Catalyzed Competitive Heteropolymer Cleavage", The Journal of Physical Chemistry B, (2011), 115 (37), 11017–11027, DOI: 10.1021/jp206321b
  • J. L. Suter , P. V. Coveney , R. L. Anderson , H. C. Greenwell and S. Cliffe, "Rule based design of clay-swelling inhibitors" Energy Environ. Sci., 2011,4, 4572-4586, DOI: 10.1039/C1EE01280K
  • S. J. Zasada, A. N. Haidar, and P. V. Coveney, "On the Usability of Grid Middleware and Security Mechanisms", Philosophical Transactions of the Royal Society A, (2011), 369, 3413-3428 , DOI: 10.1098/rsta.2011.0131
  • S. Wan and P. V. Coveney, "Molecular Dynamics Simulation Reveals Structural and Thermodynamic Features of Kinase Activation by Cancer Mutations within the Epidermal Growth Factor Receptor", J. Comput. Chem., (2011), Published Online, DOI: 10.1002/jcc.21866
  • L. Biferale, P. V. Coveney, S. Ubertini and S. Succi, "Discrete simulation of fluid dynamics: methods", Phil. Trans. R. Soc. A, (2011), 369, 2152-2154, DOI: 10.1098/rsta.2011.0101
  • B. M. Boghosian, L. M. Fazendeiro, J. Latt, H. Tang and P. V. Coveney, "New variational principles for locating periodic orbits of differential equations", Phil. Trans. R. Soc. A, (2011), 369, 2211-2218, DOI: 10.1098/rsta.2011.0066.
  • B. M. Boghosian, A. Brown, J. Latt, H. Tang, L. M. Fazendeiro and P. V. Coveney, "Unstable periodic orbits in the Lorenz attractor", Phil. Trans. R. Soc. A, (2011), 369, 2345-2353, DOI: 10.1098/rsta.2011.0067.
  • P. V. Coveney, V. Diaz, P. Hunter, P. Kohl, and M. Viceconti, "The Virtual Physiological Human" Interface Focus June 6, (2011) 1:281-285; published online before print March 31, 2011, DOI: 10.1098/rsfs.2011.0020.
  • K. Marias, D. Dionysiou, V. Sakkalis, N. Graf, R. M. Bohle, P. V. Coveney, S. Wan, A. Folarin, P. Büchler, M. Reyes, G. Clapworthy, E. Liu, J. Sabczynski, T. Bily, A. Roniotis, M. Tsiknakis, E. Kolokotroni, S. Giatili, C. Veith, E. Messe, H. Stenzhorn, Yoo-Jin Kim, S. Zasada, A. N. Haidar, C. May, S. Bauer, T. Wang, Y. Zhao, M. Karasek, R. Grewer, A. Franz, and G. Stamatakos, "Clinically driven design of multi-scale cancer models: the ContraCancrum project paradigm", Interface Focus June 6, 2011 1:450-461; published online before print March 30, (2011), DOI: 10.1098/rsfs.2010.0037.
  • A. N. Haidar, S. J. Zasada, P. V. Coveney, A. E. Abdallah, B. Beckles, and M. A. S. Jones, "Audited credential delegation: a usable security solution for the virtual physiological human toolkit", Interface Focus June 6, 2011 1:462-473; published online before print March 30, (2011), DOI: 10.1098/rsfs.2010.0026.
  • S. Wan, P. V. Coveney, "Rapid and accurate ranking of binding affinities of epidermal growth factor receptor sequences with selected lung cancer drugs", J. R. Soc. Interface, 8, 1114-1127, (2011), DOI: 10.1098/rsif.2010.0609.
2010
  • P. Hunter, P. V. Coveney, Bernard de Bono, V. Diaz, J. Fenner, A. F. Frangi, P. Harris, R. Hose, P. Kohl, P. Lawford, K. McCormack, M. Mendes, S. Omholt, A. Quarteroni, J. Skår, J. Tegner, S. R. Thomas, I. Tollis, I. Tsamardinos, J. H. G. M. van Beek, and M. Viceconti "A vision and strategy for the virtual physiological human in 2010 and beyond", Phil. Trans. R. Soc. A, 368, (1920), 2595-2614, (2010), DOI: 10.1098/rsta.2010.0048.
  • D. R. Flower, K. Phadwal, I. K. Macdonald, P. V. Coveney, M. N. Davies and S. Wan, "T-cell epitope prediction and immune complex simulation using molecular dynamics: state of the art and persisting challenges", Immunome Research, 6, (Suppl 2), S4, (2010), DOI: 10.1186/1745-7580-6-S2-S4.
  • M. Riedel, B. Schuller, M. Rambadt, M. S. Memon, A. S. Memon, A. Streit, Th. Lippert, S. J. Zasada, S. Manos, P. V. Coveney, F. Wolf and D. Kranzlmüller, "Exploring the Potential of Using Multiple e-Science Infrastructures with Emerging Open Standards-based e-Health Research Tools", International Conference on Cluster, Cloud and Grid Computing (CCGrid), 2010 10th IEEE/ACM, 341 - 348, (2010), DOI: 10.1109/CCGRID.2010.96.
  • J. B. Swadling, P. V. Coveney, and H. C. Greenwell, "Clay Minerals Mediate Folding and Regioselective Interactions of RNA: A Large-Scale Atomistic Simulation Study", Journal of the American Chemical Society, 132, 13750–13764, (2010), DOI: idoi:10.1021/ja104106y.
  • T. D. Hewer, M. Nekovee and P. V. Coveney "Reducing Congestion in Obstructed Highways with Traffic Data Dissemination Using Ad hoc Vehicular Networks", EURASIP Journal on Advances in Signal Processing, Article ID 169503, (2010), DOI: idoi:10.1155/2010/169503.
  • R. S. Saksena, M. D. Mazzeo, S. J. Zasada and P. V. Coveney, "Petascale lattice-Boltzmann studies of amphiphilic cubic liquid crystalline materials in a globally distributed high-performance computing and visualization environment", Phil. Trans. R. Soc. A, 368, 3983-3999, (2010), DOI: 10.1098/rsta.2010.0160 .
  • J. Cooper, F. Cervenansky, G. De Fabritiis, J. Fenner, D. Friboulet, T. Giorgino, S. Manos, Y. Martelli, J. Villà-Freixa, S. Zasada, S. Lloyd, K. McCormack, and P. V. Coveney, "The Virtual Physiological Human ToolKit", Phil. Trans. R. Soc. A, 368, 3925-3936, (2010), DOI: 10.1098/rsta.2010.0144.
  • G. M. Doctors, M. D. Mazzeo, and P. V. Coveney, "A computationally efficient method for simulating fluid flow in elastic pipes in three dimensions", Computer Physics Communications, 181, 1584-1592, (2010), DOI: 10.1016/j.cpc.2010.05.012.
  • S. K. Sadiq, D. W. Wright, O. A. Kenway, P. V. Coveney, "Accurate Ensemble Molecular Dynamics Binding Free Energy Ranking of Multidrug-Resistant HIV-1 Proteases", Journal of Chemical Information and Modeling, 50, 890-905, (2010), DOI: 10.1021/ci100007w.
  • P. Sloot, P. V. Coveney, J. Dongarra, "Preface", Journal of Computational Science, 1, 3-4, (2010), DOI: 10.1016/j.jocs.2010.04.003.
  • L. Fazendeiro, B..M. Boghosian, P. V. Coveney, J. Latt, "Unstable periodic orbits in weak turbulence", Journal of Computational Science, 1, 13-23, (2010), DOI: 10.1016/j.jocs.2010.03.004.
  • J. F. Annett, P. V. Coveney, "Special section: CompSci07, Computational Science 2007: Interdisciplinary challenges and perspectives, from the Grid to e-Science", Future Generation Computer Systems, 26, 504-505, (2010), DOI: 10.1016/j.future.2009.10.009.
  • R.L. Anderson, I. Ratcliffe, H.C. Greenwell, P.A. Williams, S. Cliffe and P.V. Coveney, "Clay swelling — A challenge in the oilfield", Earth-Science Reviews, 98, (3-4), 201-216, (2010), DOI: 10.1016/j.earscirev.2009.11.003.
  • P. V. Coveney, G. Giupponi, S. Jha, S. Manos, J. MacLaren, S. M. Pickles, R. S. Saksena, T. Soddemann, J. L. Suter, M. Thyveetil, and S. J. Zasada, "Large scale computational science on federated international grids: The role of switched optical networks, Future Generation Computer Systems", Future Generation Computer Systems, 26, (1), 99-110, (2010), DOI: 10.1016/j.future.2008.09.013.
  • M. D. Mazzeo, S. Manos, P. V. Coveney, "In situ ray tracing and computational steering for interactive blood flow simulation", Computer Physics Communications, 181, (2), 355-370, (2010). DOI: 10.1016/j.cpc.2009.10.013.
  • M. Nekovee, R. Saksena, "Simulations of large-scale WiFi-based wireless networks: Interdisciplinary challenges and applications", Future Generation Computer Systems, 26, (3), 514-520 (2010), DOI: 10.1016/j.future.2008.05.007.
2009
  • M. Atkinson, D. Britton, P. V. Coveney et al., "Century‐of‐Information Research (CIR): A Strategy for Research and Innovation in the Century of Information", Prometheus, 27, 27-45 (2009), DOI: 10.1080/08109020802657479.
  • S. J. Zasada and P. V. Coveney, "From campus resources to federated international grids: bridging the gap with the application hosting environment", Proceedings of the 5th Grid Computing Environments Workshop, Article No.: 10, (2009), ISBN:978-1-60558-887-2
  • R. L. Anderson, H. C. Greenwell, J. L. Suter, P. V. Coveney and M. Thyveetil, "Determining materials properties of natural composites using molecular simulation", Journal of Materials Chemistry, 19, (39), 7251-7262, (2009), DOI: 10.1039/b909119j.
  • P. V. Coveney and M. P. Atkinson (Eds), "Crossing Boundaries: Computational Science, e-Science and Global e-Infrastructure I", theme issue of Phil. Trans. R. Soc. A, 367, (1897), 2425-2617, (2009). DOI: 10.1098/rsta.2009.0061.
  • P. V. Coveney and M. P. Atkinson (Eds), "Crossing Boundaries: Computational Science, e-Science and Global e-Infrastructure II", theme issue of Phil. Trans. R. Soc. A, 367, (1898), 2621-2806, (2009). DOI: 10.1098/rsta.2009.0102.
  • D. Gavaghan, P. V. Coveney, and P. Kohl (Eds), "The Virtual Physiological Human: Tools and Applications I", theme issue of Phil. Trans. R. Soc. A, 367, (1895), 1817-2118, (2009). DOI: 10.1098/rsta.2009.0070.
  • H. C. Greenwell, P. V. Coveney, "Investigating organic-clay interactions", Geochimica et Cosmochimica Acta, 73, (13, supplement 1), A463, (2009), DOI: j.gca.2009.05.025.
  • T. Hewer, M. Nekovee, P. V. Coveney, "Parameter exploration in parallel for dynamic vehicular network efficiency", Advances in Computational Tools for Engineering Applications, International Conference on, 16-20, (2009), DOI: 10.1109/ACTEA.2009.5227879.
  • P. Kohl, P. V. Coveney, and D. Gavaghan (Eds), "The Virtual Physiological Human: Tools and Applications II", theme issue of Phil. Trans. R. Soc. A, 367, (1896), 2121-2421, (2009). DOI: 10.1098/rsta.2009.0071.
  • H. Martin, S. Jha, S. Howorka, and P. V. Coveney, "Determination of Free Energy Profiles for the Translocation of Polynucleotides through alpha-Hemolysin Nanopores using Non-Equilibrium Molecular Dynamics Simulations", Journal of Chemical Theory and Computation, 5, (8), 2135-2148, (2009). DOI: 10.1021/ct9000894.
  • R. S. Saksena, B. Boghosian, L. Fazendeiro, O. A. Kenway, S. Manos, M. D. Mazzeo, S. K. Sadiq, J. L. Suter, D. Wright, and P. V. Coveney, "Real Science at the Petascale", Philosophical Transactions of the Royal Society A, 367, (1897), 2557-2571, (2009). DOI: 10.1098/rsta.2009.0049.
  • R. S. Saksena and P. V. Coveney, "Rheological response and dynamics of the amphiphilic diamond phase from kinetic lattice-Boltzmann simulations", Proceedings of the Royal Society A, 465, (2106), 1977-2002, (2009), DOI: 10.1098/rspa.2008.0479.
  • R. S. Saksena and P. V. Coveney, "Shear rheology of amphiphilic cubic liquid crystals from large-scale kinetic lattice–Boltzmann simulations", Soft Matter, 5, (22), 4446–4463, (2009), DOI: 10.1039/b911884e.
  • P. M. A Sloot, P. V. Coveney, G. Ertaylan, V. Muller, C. A. Boucher, M. Bubak, "HIV decision support: from molecule to man", Philosophical Transactions of the Royal Society A-Mathematical Physical and Engineering Sciences, 367, (1898), 2691-2703, (2009), DOI: 10.1098/rsta.2009.0043.
  • J. L. Suter and P. V. Coveney, "Materials properties of clay nanocomposites: onset of negative Poisson ratio in large-scale molecular dynamics simulation", Soft Matter, 5, (20), 3896-3904, (2009), DOI: 10.1039/b907590a.
  • J. L. Suter, R. L. Anderson, H. C. Greenwell, and P. V. Coveney, "Recent advances in large-scale atomistic and coarse-grained molecular dynamics simulation of clay minerals", Journal of Materials Chemistry, 19, (17), 2482-2493, (2009) DOI: 10.1039/b820445d.
  • J. L. Suter, P. V. Coveney, "Computer simulation study of the materials properties of intercalated and exfoliated poly(ethylene)glycol clay nanocomposites", Soft Matter, 5, (11), 2239-2251, (2009), DOI: 10.1039/b822666k.
  • A. Trefethen, N. Higham, I. Duff, P. V. Coveney, "Developing a high-performance computing/numerical analysis roadmap", International Journal of High Performance Computing Applications, 23, (4), 423-426, (2009), DOI: 10.1177/1094342009347710.
  • S. Wan and P. V. Coveney, "A Comparative Study of the COX-1 and COX-2 Isozymes Bound to Lipid Membranes", Journal of Computational Chemistry, 30, (7), 1038-1050, (2009), DOI: 10.1002/jcc.21130.
  • S. J. Zasada and P. V. Coveney, "Virtualizing Access to Scientific Applications with the Application Hosting Environment", Computer Physics Communications, 180, (12), 2513-2525, (2009), DOI: 10.1016/j.cpc.2009.06.008.
2008
  • S. Manos, S. Zasada, P. V. Coveney, "Life or Death Decision-making: The Medical Case for Large-scale, On-demand Grid Computing", CTWatch Quarterly, 4, (1), (2008).
  • P. Boulet, H. C. Greenwell, R. M. Jarvis, W. Jones, P. V. Coveney, and S. Stackhouse, "Gaining Insight into the Structure and Dynamics of Clay-Polymer Nanocomposite Systems Through Computer Simulation", in P. Knauth and J. Shoonman (eds.), Nanocomposites: Ionic Conducting Materials and Structural Spectroscopies, 175-203, Springer (2008).
  • B. Chen, J. R. G. Evans, H. C. Greenwell, P. Boulet, P. V. Coveney, A. A. Bowden and A. Whiting, "A critical appraisal of polymer-clay nanocomposites", Chemical Society Reviews, 37, (3), 568-594, (2008), DOI: 10.1039/b702653f.
  • G. Clapworthy, M. Viceconti, P. V. Coveney, and P. Kohl, "The virtual physiological human: building a framework for computational biomedicine", Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 366, (1878), 2975-2978, (2008), DOI: 10.1098/rsta.2008.0103.
  • G. De Fabritiis, P. V. Coveney, and J. Villà-Freixa, "Energetics of K+ permeability through Gramicidin A by forward-reverse steered molecular dynamics", PROTEINS, 73, (1), 185-194, (2008). DOI: 10.1002/prot.22036.
  • G. De Fabritiis, S. Geroult, P. V. Coveney, and G. Waksman, "Insights from the energetics of water binding at the domain-ligand interface of the Src SH2 domain", PROTEINS, (4), 1290-1297, (2008), DOI: 10.1002/prot.22027.
  • R. Delgado-Buscalioni, P. V. Coveney, and G. De Fabritiis, "Towards multi-scale modelling of complex liquids using hybrid particle-continuum schemes", Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science, 222, (5), 769-776, (2008), DOI: 10.1243/09544062JMES746.
  • J. W. Fenner, B. Brook, G. Clapworthy, P. V. Coveney, V. Feipel, H. Gregersen, D. R. Hose, P. Kohl, P. Lawford, K. M. McCormack, D. Pinney, S. R. Thomas, S. Van Sint Jan, S. Waters, and M. Viceconti, "The EuroPhysiome, STEP and a roadmap for the virtual physiological human", Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 366, (1878), 2979-2999, (2008), DOI: 10.1098/rsta.2008.0089.
  • M. D. Mazzeo and P. V. Coveney, "HemeLB: A high performance parallel lattice-Boltzmann code for large scale fluid flow in complex geometries", Computer Physics Communications, 178, (12), 894-914, (2008). DOI: 10.1016/j.cpc.2008.02.013.
  • S. K. Sadiq, M. D. Mazzeo, S. J. Zasada, S. Manos, I. Stoica, C. V. Gale, S. J. Watson, P. Kellam, S. Brew, and P. V. Coveney, "Patient-specific simulation as a basis for clinical decision-making", Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 366, (1878), 3199-3219, (2008), DOI: 10.1098/rsta.2008.0100.
  • S. K. Sadiq, D. Wright, S. J. Watson, S. J. Zasada, I. Stoica, Ileana, and P. V. Coveney, "Automated Molecular Simulation-Based Binding Affinity Calculator for Ligand-Bound HIV-1 Proteases", Journal of Chemical Information and Modeling, 48, (9), 1909-1919, (2008), DOI: 10.1021/ci8000937.
  • R. S. Saksena and P. V. Coveney, "Self-Assembly of Ternary Cubic, Hexagonal and Lamellar Mesophases using the Lattice-Boltzmann Kinetic Method", Journal of Physical Chemistry B, 112, (10), 2950-2957, (2008), DOI: 10.1021/jp0731506.
  • D. Scott, P. V. Coveney, and S. Manos, "Design of Electroceramic Materials Using Artificial Neural Networks and Multi-Objective Evolutionary Algorithms" Journal of Chemical Information and Modeling, 48, (2), 262-273, (2008), DOI: 10.1021/ci700269r.
  • D. Scott, S. Manos, P. V. Coveney, J. Rossiny, S. Fearn, J. Kilner, R. Pullar, N. Alford, A-K. Axelsson, Y. Zhang, L. Chen, S. Yang, M. Sebastian, and J. R. G. Evans, "Functional Ceramic Materials Database: An online resource for materials research", Journal of Chemical Information and Modeling, 48, (2), 449-455, (2008), DOI: 10.1021/ci700270v.
  • I. Stoica, S. K. Sadiq, and P. V. Coveney, "Rapid and Accurate Prediction of Binding Free Energies for Saquinavir-Bound HIV-1 Proteases", Journal of the American Chemical Society, 130, (8), 2639-2648, (2008). DOI: 1021/ja0779250.
  • M.-A Thyveetil, P. V. Coveney, H. C. Greenwell, and J. Suter, "Computer Simulation Study of the Structural Stability and Materials Properties of DNA-Intercalated Layered Double Hydroxides", Journal of the American Chemical Society, 130, (14), 4742-4756, (2008). DOI: 0.1021/ja077679s.
  • M.-A Thyveetil, P. V. Coveney, H. C. Greenwell, and J. Suter, "Role of Host-Layer Flexibility in DNA Guest Intercalation Revealed by Computer Simulation of Layered Nanomaterials", Journal of the American Chemical Society, 130, (37), 12485-12495, (2008), DOI: 10.1021/ja8037068.
2007
  • B. Boghosian, P. Coveney, S. Dong, L. Finn, S. Jha, G. Karniadakis, and N. Karonis, "NEKTAR, SPICE and Vortonics: Using Federated Grids for Large Scale Scientific Applications", Cluster Computing, 10, (3), 351-364, (2007), DOI: 10.1007/s10586-007-0029-4.
  • P. V. Coveney, R. S. Saksena, S. J. Zasada, M. McKeown, and S. Pickles, "The application hosting environment: Lightweight middleware for grid-based computational science", Computer Physics Communications, 176, 406-418, (2007), DOI: 10.1016/j.cpc.2006.11.011.
  • G. De Fabritiis, M. Serrano, R. Delgado-Buscalioni, and P. V. Coveney, "Fluctuating hydrodynamic modeling of fluids at the nanoscale", Phys. Rev. E, 75, 026307, (2007), DOI: 10.1103/PhysRevE.75.026307.
  • G. De Fabritiis, J. Villà-Freixa, and P. V. Coveney, "Multiscale modelling of permeation through membrane channels using pregenerated molecular dynamics trajectories", International Journal of Modern Physics C, 18, (4), 511-519, (2007), DOI: 10.1142/S0129183107010747.
  • P. W. Fowler, K. Balali-Mood, S. Deol, P. V. Coveney, and M. S. P. Sansom, "Monotopic Enzymes and Lipid Bilayers: A Comparative Study", Biochemistry, 46, (11), 3108-3115, (2007), DOI: 10.1021/bi602455n.
  • P. W. Fowler, S. Geroult, S. Jha, G. Waksman, and P. V. Coveney, "Rapid and accurate calculation of relative binding affinities for the SH2 domain using a computational grid", Journal of Chemical Theory and Computation, 3, (3), 1193-1202, (2007), DOI: 10.1021/ct6003017.
  • G. Giupponi, G. De Fabritiis, and P. V. Coveney, "A coupled molecular-continuum hybrid model for the simulation of macromolecular dynamics", International Journal of Modern Physics C, 18, (4), 520-527, (2007), DOI: 10.1142/S0129183107010759.
  • G. Giupponi, G. De Fabritiis, and P. V. Coveney, "Hybrid method coupling fluctuating hydrodynamics and molecular dynamics for the simulation of macromolecules", Journal of Chemical Physics, 126, 154903, (2007), DOI: 10.1063/1.2720385.
  • J. Harting, G. Giupponi, and P. V. Coveney, "Structural transitions and arrest of domain growth in sheared binary immiscible fluids and microemulsions", Phys. Rev. E, 75, 04150, (2007), DOI: 10.1103/PhysRevE.75.041504.
  • S. K. Sadiq, S. Wan, and P. V. Coveney, "Insights into a Mutation-Assisted Lateral Drug Escape Mechanism from the HIV-1 Protease Active Site" Biochemistry, 46, (51), 14865-14877, (2007), DOI: 10.1021/bi700864p.
  • D. J. Scott, P. V. Coveney, J. A. Kilner, J. C. H. Rossiny, and N. Mc N. Alford, "Prediction of the functional properties of ceramic materials from composition using artificial neural networks", Journal of the European Ceramic Society, 27, (16), 4425-4435, (2007), DOI: 10.1016/j.jeurceramsoc.2007.02.212.
  • J. L. Suter, P. V. Coveney, H. C. Greenwell, and M.-A. Thyveetil, "Large-scale molecular dynamics study of montmorillonite clay: Emergence of undulatory fluctuations and determination of material properties", Journal of Physical Chemistry C, 111, (23), 8248-8259, (2007), DOI: 10.1021/jp070294b.
  • M.-A. Thyveetil, P. V. Coveney, J. L. Suter, and H. C. Greenwell, "Emergence of Undulations and Determination of Materials Properties in Large-Scale Molecular Dynamics Simulation of Layered Double Hydroxides", Chemistry of Materials, 19, (23), 5510-5523, (2007), DOI: 10.1021/cm070923u.
  • Marco Viceconti (Editor), "Seeding the EuroPhysiome: A Roadmap to the Virtual Physiological Human", STEP Consortium, (2007), http://www.europhysiome.org/RoadMap.
  • S. Wan, D. R. Flower, and P. V. Coveney, "Toward an atomistic understanding of the immune synapse: Large-scale molecular dynamics simulation of a membrane-embedded TCR-pMHC-CD4 complex", Molecular Immunology, 45, (5), 1221-1230, (2007), DOI: 10.1016/j.molimm.2007.09.022.
  • J. A. D. Wattis, and P. V. Coveney, "Sequence Selection During Polymerisation", Journal of Physical Chemistry B, 111, (32), 9546-9562, (2007), DOI: 10.1021/jp071767h.
2006
  • P. Boulet, H. C. Greenwell, S. Stackhouse and P. V. Coveney, "Recent advances in understanding the structure and reactivity of clays using electronic structure calculations", J. Mol. Struct. Theo., 762, (1-3), 33-48, (2006), DOI: 10.1016/j.theochem.2005.10.028.
  • J. Chin and P. V. Coveney, "Chirality and domain growth in the gyroid mesophase", Proceedings of the Royal Society of London Series A, 462, 3575-3600, (2006), DOI: 10.1098/rspa.2006.1741.
  • P. V. Coveney, G. De Fabritiis, M. J. Harvey, S. M. Pickles and A. R. Porter, "Coupled applications on distributed resources", Computer Physics Communications, 175, (6), 389-396, (2006), DOI: 10.1016/j.cpc.2006.05.008.
  • P. V. Coveney and J. A. D. Wattis, "Coarse-graining and renormalisation group methods for the elucidation of the kinetics of complex nucleation and growth processes", Mol. Phys., 104, (1), 177-185, (2006), DOI: 10.1080/00268970500317210.
  • G. De Fabritiis, R. Delgado-Buscalioni and P. V. Coveney, "Multiscale modelling of liquids with molecular specificity", Physical Review Letters, 97, 134501, (2006), DOI: 10.1103/PhysRevLett.97.134501.
  • G. De Fabritiis, M. Serrano, P. Espanol and P. V. Coveney, "Efficient numerical integrators for stochastic models", Physica A, 361, (2), 429-440, (2006), DOI: 10.1016/j.physa.2005.06.090.
  • R. Delgado-Buscalioni and P. V. Coveney, "Structure of a tethered polymer under flow using molecular dynamics and hybrid molecular-continuum simulations", Physica A, 362, (1), 30-35, (2006), DOI: 10.1016/j.physa.2005.09.011.
  • P. W. Fowler and P. V. Coveney, "A Computational Protocol for the Integration of the Monotopic Protein Prostaglandin H2 Synthase into a Phospholipid Bilayer", Biophys. J., 91, 401-410, (2006), DOI: 10.1529/biophysj.105.077784.
  • G. Giupponi and P. V. Coveney, "Non-Newtonian behaviour of the gyroid mesophase: A lattice-Boltzmann study", Mathematics and Computers in Simulation, 72, (2-6), 124-127, (2006), DOI: 10.1016/j.matcom.2006.05.035.
  • G. Giupponi, J. Harting and P. V. Coveney, "Emergence of rheological properties in lattice Boltzmann simulations of gyroid mesophases", Europhysics Letters, 73, (4), 533-539, (2006), DOI: 10.1209/epl/i2005-10438-x.
  • N. González-Segredo, J. Harting, G. Giupponi and P. V. Coveney, "Stress response and structural transitions in sheared gyroidal and lamellar amphiphilic mesophases: Lattice-Boltzmann simulations", Phys. Rev. E, 73, 031503, (2006), DOI: 10.1103/PhysRevE.73.031503.
  • H. C. Greenwell, L. A. Bindley, P. R. Unwin, P. J. Holliman, W. Jones, P. V. Coveney and S. L. Barnes, "In situ monitoring of crystal growth and dissolution of oriented layered double-hydroxide crystals immobilized on silicon", Journal of Crystal Growth, 294, (1), 53-59, (2006), DOI: j.jcrysgro.2006.05.048.
  • H. C. Greenwell, A. A. Bowden, B. Chen, P. Boulet, J. R. G. Evans, P. V. Coveney and A. Whiting, "Intercalation and in situ polymerization of poly(alkylene oxide) derivatives within M+-montmorillonite (M = Li, Na, K)", Journal of Materials Chemistry, 16, (11), 1082-1094, (2006), DOI: 10.1039/b505217c.
  • H. C. Greenwell and P. V. Coveney, "Layered double hydroxide minerals as possible prebiotic information storage and transfer compounds", Origins of Life and Evolution of the Biosphere, 36, (1), 13-37, (2006), DOI: 10.1007/s11084-005-2068-2.
  • H. C. Greenwell, W. Jones, P. V. Coveney and S. Stackhouse, "On the application of computer simulation techniques to anionic and cationic clays: A materials chemistry perspective", Journal of Materials Chemistry, 16, (8), 708-723, (2006), DOI: 10.1039/b506932g.
  • M. J. Harvey, D. Scott and P. V. Coveney, "An Integrated Instrument Control and Informatics System for Combinatorial Materials Research", Journal of Chemical Information and Modeling, 46, (3), 1026-1033, (2006), DOI: 10.1021/ci050399g.
  • M. Serrano, G. De Fabritiis, P. Español and P. V. Coveney, "A stochastic Trotter integration scheme for dissipative particle dynamics", Mathematics and Computers in Simulation, 72, (2-6), 190-194, (2006), DOI: 10.1016/j.matcom.2006.05.019.
  • S. K. Sadiq, S. Wan and P. V. Coveney, "Ensemble molecular dynamics simulations of HIV-1 protease with the inhibitor saquinavir: insights into the molecular basis of drug resistance caused by the G48V and L90M mutations", Antiviral Therapy, 11, (5), S151-S151, (2006),
2005
  • R. J. Blake, P. V. Coveney, P. Clarke, S. M. Pickles, "The TeraGyroid Experiment - Supercomputing 2003", Scientific Computing, 13, Number 1, 1-17, (2005), available online.
  • B. Boghosian and P. V. Coveney, "Scientific Applications of Grid Computing", Computing in Science and Engineering, 7 (5), 10-13, (2005), DOI: 10.1109/MCSE.2005.95.
  • B. Chen, A. A. Bowden, H. C. Greenwell, P. Boulet, P. V. Coveney, A. Whiting, J. R. G. Evans, "Morphology and elastic modulus of novel poly[oligo(ethylene glycol) diacrylate]-montmorillonite nanocomposites", J. Polym. Sci. Part B: Polym. Phys., 43, (14), 1785-1793, (2005), DOI: 10.1002/polb.20459.
  • J. Chin, M. J. Harvey, S. Jha and P. V. Coveney, "Scientific grid computing: The first generation", Computing in Science and Engineering, 7 (5), 24-32, (2005), DOI: 10.1109/MCSE.2005.100.
  • P. V. Coveney, ed., "Scientific Grid computing", theme issue of Phil. Trans. R. Soc. A., 363 (1833), 1701-2095, (2005), available online.
  • P. V. Coveney, "Scientific Grid computing", Phil. Trans. R. Soc. A., 363 (1833), 1707-1713, (2005), DOI: 10.1098/rsta.2005.1632.
  • P. V. Coveney and P. W. Fowler, "Modelling biological complexity: a physical scientist's perspective", Journal of the Royal Society Interface, 2, (4), 267-280, (2005), DOI: 10.1098/rsif.2005.0045.
  • P. Coveney, J. Vicary, J. Chin and M. Harvey, "WEDS: a Web services-based environment for distributed simulation", Phil. Trans. R. Soc. A., 363 (1833), 1807-1816, (2005), DOI: 10.1098/rsta.2005.1608.
  • R. Delgado-Buscalioni, P. V. Coveney, G. D. Riley and R. W. Ford, "Hybrid molecular-continuum fluid models: implementation within a general framework", Phil. Trans. R. Soc. A., 363 (1833), 1975-1985, (2005), DOI: 10.1098/rsta.2005.1623.
  • R. Delgado-Buscalioni, G. De Fabritiis and P. V. Coveney, "Determination of the chemical potential using energy-biased sampling", J. Chem. Phys., 123, 054105, (2005), DOI: 10.1063/1.2000244.
  • R. Delgado-Buscalioni, E. G. Flekkøy and P. V. Coveney, "Fluctuations and continuity in particle-continuum hybrid simulations of unsteady flows based on flux-exchange", Europhys. Lett., 69, Issue 6, 959-965, (2005), DOI: 10.1209/epl/i2004-10431-y.
  • P. W. Fowler, S. Jha and P. V. Coveney, "Grid-based steered thermodynamic integration accelerates the calculation of binding free energies", Phil. Trans. R. Soc. A., 363 (1833), 1999-2015, (2005), DOI: 10.1098/rsta.2005.1625.
  • F. Giordanetto, P. W. Fowler, M. Saqi and P. V. Coveney, "Large scale molecular dynamics simulation of native and mutant dihydropteroate synthase-sulphanilamide complexes suggests the molecular basis for dihydropteroate synthase drug resistance", Phil. Trans. R. Soc. A., 363 (1833), 2055-2073, (2005), DOI: 10.1098/rsta.2005.1629.
  • H. C. Greenwell, M. J. Harvey, P. Boulet, A. A. Bowden, P. V. Coveney, and A. Whiting, "Interlayer structure and bonding in nonswelling primary amine intercalated clays", Macromolecules, 38, (14), 6189-6200, (2005), DOI: 10.1021/ma0503817.
  • P. Guan, M. Davies, D. J. Taylor, S. Wan, H. McSparron, S. L. Hemsley, C. Toseland, M. J. Blythe, P. D. Taylor, V. Walshe , C. K. Hattotuwagama, I. A. Doytchinova, P. V. Coveney, P. Borrow, D. R. Flower, "Computational Chemistry, Informatics, and the Discovery of Vaccines", Current Computer-Aided Drug Design, 1, 377-398, (2005).
  • J. Harting, M. J. Harvey, J. Chin and P. V. Coveney, "Detection and tracking of defects in the gyroid mesophase", Comp. Phys. Commun., 165, Issue 2, 97-109, (2005), DOI: 10.1016/j.cpc.2004.10.001.
  • J. Harting, J. Chin, M. Venturoli and P. V. Coveney, "Large-scale lattice Boltzmann simulations of complex fluids: advances through the advent of computational Grids", Phil. Trans. R. Soc. A., 363 (1833), 1895-1915, (2005). DOI: 10.1098/rsta.2005.1618 .
  • S. Jha and P. V. Coveney, "Force field validation for nucleic acid simulations: Comparing energies and dynamics of a DNA dodecamer", Journal of Computational Chemistry, 26, (15), 1617-1627, (2005), DOI: 10.1002/jcc.20300.
  • R. S. Kalawsky, S. P. Nee, I. Holmes and P. V. Coveney, "A grid-enabled lightweight computational steering client: a .NET PDA implementation", Phil. Trans. R. Soc. A., 363 (1833), 1885-1894, (2005). DOI: 10.1098/rsta.2005.1617.
  • R. S. Kalawsky, J. O'Brien and P. V. Coveney, "Improving scientists' interaction with complex computational—visualization environments based on a distributed grid infrastructure", Phil. Trans. R. Soc. A., 363 (1833), 1867-1884, (2005), DOI: 10.1098/rsta.2005.1616.
  • K. R. Mayes, M. Luján, G. D. Riley, J. Chin, P. V. Coveney and J. R. Gurd, "Towards performance control on the Grid", Phil. Trans. R. Soc. A., 363 (1833), 1793-1805, (2005), DOI: 10.1098/rsta.2005.1607.
  • S. P. Newman, S. J. Clifford, P. V. Coveney, V. Gupta, J. D. Blanchard, F. Serafin, D. Ben-Amotz and S. Diamond, "Anomalous fluorescence in near-infrared Raman spectroscopy of cementitious materials", Cem. Concr. Res., 35 (8), 1620-1628, (2005), DOI: 10.1016/j.cemconres.2004.10.001.
  • S. Wan, P. V. Coveney and D. Flower, "Molecular basis of peptide recognition by the TCR: affinity differences calculated using large scale computing", J. Immunol., 175, 1715-1723, (2005). available online.
  • S. Wan, P. V. Coveney and D. R. Flower, "Peptide recognition by the T cell receptor: comparison of binding free energies from thermodynamic integration, Poisson-Boltzmann and linear interaction energy approximations", Phil. Trans. R. Soc. A., 363 (1833), 2037-2053, (2005), DOI: 10.1098/rsta.2005.1627.
2004
  • M. Al-Ghoul, J. P. Boon and P. V. Coveney, Preface, Phil. Trans. R. Soc. Lond. A, 362, Number 1821, 1551-1552, (2004), DOI: 10.1098/rsta.2004.1417.
  • S. Barsky, R. Delgado-Buscalioni and P. V. Coveney, "Comparison of Molecular Dynamics with Hybrid Continuum-Molecular Dynamics for a Single Tethered Polymer in a Solvent", Journal of Chemical Physics, 121, Issue 5, 2403-2411, (2004); DOI: 10.1063/1.1767996. selected for Virtual Journal of Biological Physics Research, 8 (Issue 2, July 15 2004), Fundamental Polymer Statics/Dynamics section; http://www.vjbio.org.
  • D. M. Benoit, "Fast vibrational self-consistent field calculations through a reduced mode-mode coupling scheme", J. Chem. Phys., 120, 562-573, (2004); DOI: 10.1063/1.1631817.
  • B. M. Boghosian, P. J. Love, J. Yepez and P. V. Coveney, "Galilean-invariant multi-speed entropic lattice Boltzmann models", Physica D: Nonlinear Phenomena, 192, Issues 1-4, 169-181, (2004); DOI: 10.1016/j.physd.2004.01.018.
  • P. Boulet, P. V. Coveney and S. Stackhouse, "Simulation of hydrated Li+-, Na+- and K+-montmorillonite/polymer nanocomposites using large-scale molecular dynamics." Chemical Physics Letters, 389, Issues 4-6, 261-267, (2004); DOI: 10.1016/j.cplett.2004.03.084.
  • J. Chin and P. V. Coveney, "Towards tractable toolkits for the Grid: a plea for lightweight, usable middleware." UK e-Science Technical Report, number UKeS-2004-01; available online as PDF or HTML.
  • J. Chin, P. V. Coveney and S. Jha, "The Current State of the Grid", a book review of "Grid Computing: Making the Global Infrastructure a Reality", by F. Berman, G. Fox, and A. J. G. Hey, Computing in Science and Engineering, 6, Number 5, (2004); available from CiSE.
  • P. V. Coveney, H. C. Greenwell and M. J. Harvey, "Large-scale MD Simulations for Studying the Interlayer Structure in Cationic and Anionic Clays and Nanocomposite Materials", Geochem. Cosmica Acta, 68, A106, (2004).
  • P. V. Coveney and M. J. Harvey, "Europe: AG aids RealityGrid and the TeraGyroid Project", AG Focus, Vol 2, Issue 1, page 4, Spring 2004; available online (5.7MB).
  • P. V. Coveney, J. Vicary, J. Chin, M. J. Harvey, "Introducing WEDS: a WSRF-based Environment for Distributed Simulation", UK e-Science Technical Report, number UKeS-2004-07; available online.
  • P. V. Coveney, M. Watkinson, A. Whiting, E. S. Boek, "Stabilizing clayey formations", US Patent Number, 6,787,507, Link to US Patent Office website.
  • G. De Fabritiis, R. Delgado-Buscalioni and P. V. Coveney, "Energy controlled insertion of polar molecules in dense fluids", J. Chem. Phys., 121, Issue 24, 12139-12142, (2004), DOI: 10.1063/1.1835957.
  • R. Delgado-Buscalioni and P. V. Coveney, "Hybrid molecular-continuum fluid dynamics", Phil. Trans. R. Soc. Lond. A, 362, Number 1821, 1639-1654, (2004), DOI: 10.1098/rsta.2004.1401.
  • N. González-Segredo and P. V. Coveney, "Coarsening dynamics of ternary amphiphilic fluids and the self-assembly of the gyroid and sponge mesophases: Lattice-Boltzmann simulations." Phys. Rev. E, 69, 061501 (2004); DOI: 10.1103/PhysRevE.69.061501; selected for Virtual Journal of Nanoscale Science & Technology, 9, (Issue 23, June 14 2004), Supramolecular and Biochemical Assembly section; http://www.vjnano.org.
  • N. González-Segredo and P. V. Coveney, "Self-assembly of the gyroid cubic mesophase: lattice-Boltzmann simulations." Europhys. Lett., 65, 6, 795-801 (2004); DOI: 10.1209/epl/i2003-10129-8 , or here.
  • C. Grindon, S. Harris, T. Evans, K. Novik, P. Coveney and C. Laughton, "Large Scale Molecular Dynamics Simulation of DNA: Implementation and Validation of the Amber98 Forcefield in LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator)." Phil. Trans. R. Soc. London Series A, 362, Number 1820, 1373-1386, (2004); DOI: 10.1098/rsta.2004.1381.
  • Patrick Grosfils, Jean Pierre Boon, Jonathan Chin, and E. S. Boek, "Structural and dynamical characterization of Hele-Shaw viscous fingering", Phil. Trans. R. Soc. Lond. A, 362, Number 1821, 1723-1734, DOI: 10.1098/rsta.2004.1398.
  • J. Harting, M. Venturoli and P. V. Coveney, "Large-scale grid-enabled lattice Boltzmann simulations of complex fluid flow in porous media and under shear", Phil. Trans. R. Soc. Lond. A, 362, Number 1821, 1703-1722, DOI: 10.1098/rsta.2004.1402.
  • S. M. Pickles, R. J. Blake, B. M. Boghosian, J. M. Brooke, J. Chin, P. E. L. Clarke, P. V. Coveney, N. González-Segredo, R. Haines, J. Harting, M. Harvey, M. A. S. Jones, M. McKeown, R. L. Pinning, A. R. Porter, K. Roy, M. Riding, "The TeraGyroid Experiment." Proceedings of GGF10, 2004. .
  • S. Stackhouse, P. V. Coveney, and D. M. Benoit, "Density Functional Theory Based Study of the Dehydroxylation Behaviour of Aluminous Dioctahedral 2:1 Layer Type Clay Minerals", J. Phys. Chem. B, 108, (28), 9685-9694, (2004); DOI: 10.1021/jp037608p.
  • S. Wan, P. V. Coveney and D. Flower, "Large scale molecular dynamics simulations of HLA-A*0201 complexed with a tumour-specific antigenic peptide: Can the α3 and β2m domains be neglected?", Journal of Computational Chemistry, 25 (15), 1803-1813, (2004); DOI: 10.1002/jcc.20100.
  • J. A. D. Wattis, C. D. Bolton and P. V. Coveney, "The Becker-Döring equations with exponentially size-dependent rate coefficients." J. Phys. A: Math. Gen., 37, 2895-2912 (2004); available online.
  • J. A. D. Wattis and P. V. Coveney, "Symmetry-breaking in chiral polymerisation," Origins of Life and Evolution of the Biosphere, (in press, 2004) available online.
2003
  • E. S. Boek, J. Chin and P. V. Coveney, "Lattice Boltzmann Simulation of the Flow of Non-Newtonian Fluids in Porous Media," International Journal of Modern Physics B, 17, Nos. 1 & 2, 99-102 (2003); available online as a PS file (210KB).
  • B. M. Boghosian, P. J. Love, P. V. Coveney, I. V. Karlin, S. Succi, and J. Yepez, "Galilean-Invariant Lattice-Boltzmann Models with H-Theorem," Phys. Rev. E , 68, 025103(R) (2003); DOI: 10.1103/PhysRevE.68.025103.
  • A. A. Bowden, P. Boulet, P. V. Coveney and A. Whiting, "Combined experimental and theoretical investigations of clay-polymer nanocomposites: intercalation of single bifunctional organic compounds in Na+-montmorillonite and Na+-hectorite clays for the design of new materials," J. Mater. Chem., 13, 2540-2550 (2003); DOI: 10.1039/b307752g.
  • J. M. Brooke, P. V. Coveney, J. Harting, S. Jha, S. M. Pickles, R. L. Pinning, A. R. Porter, "Computational Steering in RealityGrid," Proceedings of the UK e-Science All Hands Meeting 2003, published online at http://www.nesc.ac.uk/events/ahm2003/AHMCD/ , article is available here.
  • J. Chin, J. Harting, S. Jha, P. V. Coveney, A. R. Porter, and S. M. Pickles, "Steering in computational science: mesoscale modelling and simulation," Contemporary Physics, 44, 417-434 (2003); DOI: 10.1080/00107510310001605046.
  • P. V. Coveney, "Modeling structure and properties in mesoscale fluid systems," Fiona Case and Paschalis Alexandridis, eds., Mesoscale Phenomena in Fluid Systems, 206-226, (ACS Symposium Series), Oxford University Press 2003.
  • P. V. Coveney, "Self-organization and complexity: a new age for theory, computation and experiment," Phil. Trans. R. Soc. Lond. A 361, Number 1807, 1057 (2003); available online.
  • R. Delgado-Buscalioni and P. V. Coveney, "Continuum-particle hybrid coupling for mass, momentum, and energy transfers in unsteady fluid flow," Phys. Rev. E 67, 046704 (2003); available online from the American Physical Society.
  • R. Delgado-Buscalioni and P. V. Coveney, "USHER: An algorithm for particle insertion in dense fluids," J. Chem. Phys. 119, 2, 978-987 (2003); available online from the American Institute of Physics.
  • G. De Fabritiis and P. V. Coveney, "Dynamical geometry for multiscale dissipative particle dynamics," Comp. Phys. Commun., 153, Issue 2, 209-226 (2003); DOI: 10.1016/S0010-4655(03)00199-1.
  • D. Flower, H. McSparron, M. J. Blythe, C. Zygouri, D. Taylor, P. Guan, S. Wan, P. V. Coveney, V. Walshe, P. Borrow, and I. A. Doytchinova, "Computational vaccinology: quantitative approaches," Novartis Found. Symp., 254, 102-20 (2003); discussion 120-5, 216-22, 250-2; abstract available online.
  • N. González-Segredo, M. Nekovee, and P. V. Coveney, "Three-dimensional lattice-Boltzmann simulations of critical spinodal decomposition in binary immiscible fluids," Phys. Rev. E 67, 046304 (2003); available online from the American Physical Society.
  • H. C. Greenwell, W. Jones, S. P. Newman, and P. V. Coveney, "Computer simulation of interlayer arrangement in cinnamate intercalated layered double hydroxides," J. Mol. Struct. 647, 75 (2003).
  • H. C. Greenwell, S. Stackhouse, P. V. Coveney, and W. Jones, "A density functional theory study of catalytic trans -esterification by tert -butoxide MgAl anionic clays," J. Phys. Chem. B 107, 3476 (2003); DOI: 10.1021/jp027663i.
  • J. Harting, S. Wan, and P. V. Coveney, "RealityGrid: high performance computing, visualisation, computational steering and teragrids", Capability Computing: The newsletter of the HPCx community, issue 2, 4-7 (2003); available online.
  • P. J. Love, M. Nekovee, P. V. Coveney, J. Chin, N. González-Segredo, and J. M. R. Martin, "Simulations of amphiphilic fluids using mesoscale lattice-Boltzmann and lattice-gas methods," Comp. Phys. Commun. 153, Issue 3, 340-358 (2003); DOI: 10.1016/S0010-4655(03)00200-5.
  • J. Skår and P. V. Coveney, eds., "Self-organization: the quest for the origin and evolution of structure." Proceedings of the 2002 Nobel Symposium on self-organization. Phil. Trans. R. Soc. Lond. A 361, Number 1807 (2003);
  • J. Skår and P. V. Coveney, "Preface," Phil. Trans. R. Soc. Lond. A 361, Number 1807, 1047 (2003); available online.
  • J. Skår and P. V. Coveney, "Developmental and physiological circuits: dissecting complexity. A report on a talk given by Dr Leroy Hood," Phil. Trans. R. Soc. Lond. A 361, Number 1807, 1313 (2003); available online.
  • D. A. Tilbrook, G. J. Pearson, M. Braden, and P. V. Coveney, "Prediction of polymerisation shrinkage using molecular modelling," J. Polym. Sci. Part B: Polym. Phys. 41, 528 (2003).
2002
  • B. M. Boghosian, P. J. Love, and D. A Meyer, "Towards the simplest hydrodynamic lattice-gas model," Phil. Trans. R. Soc. Lond. A 360, 333 (2002); available as a PDF file (750 kB).
  • D. Bosbach, P. V. Coveney, J. L. W. Griffin, A. Putnis, P. Risthaus, S.Stackhouse, and A. Whiting, "The rational design, synthesis and demonstration of the recognition and binding of a diaza-dioxa-12-crown-4 diphosphonate macrocycle to all crystal growth faces of barium sulfate," J. Chem. Soc. Perkin Trans. II 7, 1238 (2002); available online from the Royal Society of Chemistry.
  • J. Chin, E. S. Boek, and P. V. Coveney, "Lattice Boltzmann simulation of the flow of binary immiscible fluids with different viscosities using the Shan-Chen microscopic interaction model," Phil. Trans. R. Soc. Lond. A 360, 547 (2002); available as a PDF file (640 kB).
  • J. Chin and P. V. Coveney, "Lattice Boltzmann study of spinodal decomposition in two dimensions," Phys. Rev. E 66 016303 (2002); available from the American Physical Society Online Journal Publishing Service.
  • P. V. Coveney, J. L. W. Griffin, M. Watkinson, A. Whiting, and E. S. Boek, "Novel exfoliated clay-nanoncomposite materials by in situ co-polymerisation of intercalated monomers: A combinatorial discovery approach," Mol. Simul. 28, 295 (2002).
  • P. V. Coveney and S. Succi, eds., "Discrete modelling and simulation of fluid dynamics," Proceedings of the 2-6 July 2001 Cargese Conference, Phil. Trans. R. Soc. Lond. A 360 293 (2002); available online from the Royal Society.
  • P. V. Coveney and S. Succi, "Jean Pierre Boon," Phil. Trans. R. Soc. Lond. A 360, 293 (2002); available as a PDF file (130 kB).
  • P. V. Coveney and S. Succi, "Preface," Phil. Trans. R. Soc. Lond. A 360, 295 (2002); available as a PDF file (64 kB).
  • G. De Fabritiis, P. V. Coveney, and E. G. Flekkøy, "Multiscale dissipative particle dynamics," Phil. Trans. R. Soc. Lond. A 360, 317 (2002); available as a PDF file (290 kB).
  • G. De Fabritiis, S. Succi, and P. V. Coveney, "Electronic structure calculations using self-adaptive multiscale Voronoi basis functions," J. Stat. Phys. 107, 159 (2002).
  • P. J. Love, "A particulate basis for a lattice-gas model of amphiphilic fluids," Phil. Trans. R. Soc. Lond. A 360, 345 (2002); available as a PDF file (270 kB).
  • P. J. Love and P. V. Coveney, "Three-dimensional hydrodynamic lattice-gas simulations of ternary amphiphilic fluids under shear flow," Phil. Trans. R. Soc. Lond. A 360, 357 (2002); available as a PDF file (5.7 MB).
  • S. P. Newman, T. Di Cristina, P. V. Coveney, and W. Jones, "Molecular dynamics simulation of cationic and anionic clays containing amino acids," Langmuir 18 2933 (2002); available online from the American Chemical Society.
  • M. Serrano, G. De Fabritiis, P. Español, E. G. Flekkøy, and P. V. Coveney, "Mesoscopic dynamics of Voronoi fluid particles," J. Phys. A: Math. Gen. 35, 1605 (2002); also available as a gzipped PostScript file (170 kB).
  • S. Stackhouse and P. V. Coveney, "Study of thermally treated lithium montmorillonite by ab initio methods," J. Phys. Chem. B 106, 12470 (2002); available online from the American Chemical Society.
2001
  • A. S. Bains, E. S. Boek, P. V. Coveney, S. J. Williams, and M. V. Akbar, "Molecular modelling of the mechanism of action of organic clay-swelling inhibitors," Mol. Sim. 26, 101 (2001).
  • O. F. Bandtlow and P. V. Coveney, "On the existence of dynamical systems with exponentially decaying collision operators," J. Phys. A: Math. Gen. 34, 4585 (2001); available as a gzipped PostScript file (92 kB).
  • D. M. Benoit, D. Sebastiani and M. Parrinello, "Accurate total energies without self-consistency", Phys. Rev. Lett., 87, 226401 (2001); DOI: 10.1103/PhysRevLett.87.226401.
  • B. M. Boghosian, P. V. Coveney, P. Love, and J.-B. Maillet, "Mesoscale modeling of amphiphilic fluid dynamics," Mol. Sim. 26, 85 (2001); .
  • B. M. Boghosian, J. Yepez, P. V. Coveney, and A. J. Wagner, "Entropic lattice Boltzmann methods" Proc. R. Soc. London A 457, 717 (2001); cf. cond-mat/0005260.
  • J. R. G. Evans, M. J. Edirisinghe, P. V. Coveney, and J. Eames, "Combinatorial searches of inorganic materials using the ink-jet printer: Science, philosophy and technology," Journal of the European Ceramic Society, 21, 2291 (2001).
  • R. Gaudoin, M. Nekovee, W. M. C. Foulkes, R. J. Needs, and G. Rajagopal, "Inhomogeneous random-phase approximation and many-electron trial wave functions," Phys. Rev. B 63, 115115 (2001); available from the American Physical Society Online Journal Publishing Service.
  • C. R. Grindon, S. A. Harris, T. J. Evans, K. E. Novik, P. V. Coveney, and C. A. Laughton, "Porting the AMBER force field to LAMMPS: Massively parallel molecular dynamics simulations of DNA," CSAR Focus 7, 5 (2001).
  • M. B. Hoffman and P. V. Coveney, "Lattice molecular dynamics," Mol. Simul. 27, 157 (2001).
  • P. J. Love, P. V. Coveney, and B. M. Boghosian, "Three dimensional hydrodynamic lattice-gas simulations of domain growth and self-assembly in binary immiscible and ternary amphiphilic fluids," Phys. Rev. E 64, 021503 (2001); available from the American Physical Society Online Journal Publishing Service.
  • P. J. Love, J.-B. Maillet, and P. V. Coveney, "Three-dimensional hydrodynamic lattice-gas simulations of binary immiscible and ternary amphiphilic flow through porous media," Phys. Rev. E 64 , 061302 (2001); available from the American Physical Society Online Journal Publishing Service.
  • M. Nekovee, J. Chin, N. González-Segredo, and P. V. Coveney, "A parallel lattice-Boltzmann method for large scale simulations of complex fluids," E. Ramos et al., eds., Computational Fluid Dynamics, Proceedings of the Fourth UNAM Supercomputing Conference, Singapore (World Scientific, 2001); available as a gzipped PostScript file (1.2 MB).
  • M. Nekovee and P. V. Coveney, "Lattice-Boltzmann simulations of self-assembly of a binary water-surfactant system into ordered bicontinous cubic and lamellar phases" J. Am. Chem. Soc. 123, 12380 (2001); available from the American Chemical Society, and cf. cond-mat/0101379.
  • M. Nekovee, W. M. C. Foulkes, and R. J. Needs, "Quantum Monte Carlo analysis of exchange and correlation in the strongly inhomogeneous electron gas" Phys. Rev. Lett. 87, 036401 (2001); available from the American Physical Society Online Journal Publishing Service, and cf. cond-mat/0008181.
  • M. Nekovee and J. M. Pitarke, "Recent progress in computational many-body theory of metal surfaces," Comp. Phys. Commun. 137, 123-142 (2001); available online.
  • S. P. Newman, C. H. Greenwell, P. V. Coveney, and W. Jones, "Computer Simulations of Layered Double Hydroxides," V. Rives, ed., Layered Double Hydroxides: Present and Future (Nova Science Publishers, 2001).
  • S. Stackhouse, P. V. Coveney, and E. Sandré, "Plane-wave density functional theoretic study of formation of clay-polymer nanocomposite materials by self-catalyzed in situ intercalative polymerization", J. Am. Chem. Soc. 123 , 11764 (2001); available from the American Chemical Society.
  • J. A. D. Wattis and P. V. Coveney, "Renormalisation theoretic analysis of non-equilibrium phase transitions I: The Becker-Döring equations with power law rate coefficients," J. Phys. A: Math. Gen. 34, 8679 (2001); available as a gzipped PostScript file (72 kB).
  • J. A. D. Wattis and P. V. Coveney, "Renormalisation theoretic analysis of non-equilibrium phase transitions II: The effect of perturbations on rate coefficients in the Becker-Döring equations," J. Phys. A: Math. Gen. 34, 8697 (2001); available as a gzipped PostScript file (110 kB).
2000
  • B. M. Boghosian and P. V. Coveney, "A particulate basis for an immiscible lattice-gas model," Comp. Phys. Comm. 129, 46 (2000); cf. cond-mat/9911340.
  • B. M. Boghosian and P. V. Coveney, "Lattice Models of Amphiphilic Fluid Hydrodynamics: Simulations and Results," D. P. Landau, S. P. Lewis, and H.-B. Schluettler, eds., Computer Simulation Studies in Condensed Matter Physics XIII, Proceedings of the Thirteenth Workshop, Athens, Georgia, USA, February 2000; available as a PDF file (910 kB).
  • B. M. Boghosian, P. V. Coveney, and P. J. Love, "A three dimensional lattice-gas model for amphiphilic fluid dynamics," Proc. R. Soc. London A 456, 1431 (2000); cf. cond-mat/9907298.
  • H. Chen, B. M. Boghosian, P. V. Coveney, and M. Nekovee, "A lattice-Boltzmann model of ternary amphiphilic fluids," Proc. R. Soc. London A 456, 2043 (2000); available as a gzipped PostScript file (400 kB).
  • P. V. Coveney, "A clash of doctrines: The arrow of time in modern physics," P. Baert, ed., Time in Contemporary Intellectual Thought (Elsevier, Amsterdam, 2000).
  • P. V. Coveney, R. Davey, J. L. W. Griffin, Y. He, J. D. Hamlin, S. Stackhouse, and A. Whiting, "A new design strategy for molecular recognition in heterogeneous systems: a universal crystal-face growth inhibitor for barium sulfate," J. Am. Chem. Soc. 122, 11557 (2000); available from the American Chemical Society.
  • P. V. Coveney, H. De Silva, A. Gomtsyan, A. Whiting, and E. S. Boek, "Molecular simulation approaches to cross-linking high molecular weight polysaccharides: Application to guar-based hydraulic fracturing fluids," Mol. Sim. 25, 265 (2000).
  • E. G. Flekkøy, P. V. Coveney, and G. De Fabritiis, "Foundations of dissipative particle dynamics," Phys. Rev. E 62, 2140 (2000); available from the American Physical Society Online Journal Publishing Service, and cf. cond-mat/0002174.
  • N. González-Segredo and M. Foster, "pLRME2D: A parallel implementation of a two-dimensional hydrodynamic lattice-gas model with long-range interactions," Proceedings of the Sixth European SGI/Cray MPP Workshop, Manchester, UK (2000); available online.
  • A. Heinzmann, X.-Q. Mao, M. Akaiwa, R. T. Kroemer, P.-S. Gao, K. Ohshima, R. Umeshita, Y. Abe, S. Braun, T. Yamashita, M. H. Roberts, R. Sugimoto, K. Arima, Y. Arinobu, B. Yu, S. Kruse, T. Enomoto, Y. Dake, M. Kawai, S. Shimazu, S. Sasaki, C. N. Adra, M. Kitaichi, H. Inoue, K. Yamauchi, N. Tomichi, F. Kurimoto, N. Hamasaki, J. M. Hopkin, K. Izuhara, T. Shirakawa, and K. A. Deichmann, "Genetic variants of IL-13 signalling and human asthma and atopy," Hum. Mol. Genet. 9, 549 (2000); available from Oxford University Press.
  • T. Loerting, C. Tautermann, R. T. Kroemer, I. Kohl, A. Hallbrucker, E. Mayer, and K. R. Liedl, "On the surprising kinetic stability of carbonic acid (H2CO3)," Angew. Chem. Int. Ed. 39, 891 (2000).
  • J.-B. Maillet and P. V. Coveney, "Two-dimensional hydrodynamic lattice-gas simulations of binary immiscible and ternary amphiphilic fluid flow through porous media," Phys. Rev. E 62, 2898 (2000); available from the American Physical Society Online Journal Publishing Service, and cf. cond-mat/0005259.
  • M. Nekovee, P. V. Coveney, H. Chen, and B. M. Boghosian, "Lattice-Boltzmann model for interacting amphiphilic fluids," Phys. Rev. E 62, 8282 (2000); available from the American Physical Society Online Journal Publishing Service, and cf. cond-mat/0006319.
  • K. E. Novik and P. V. Coveney, "Spinodal decomposition of off-critical quenches with a viscous phase using dissipative particle dynamics in two and three spatial dimensions," Phys. Rev. E 61, 435 (2000); available from the American Physical Society Online Journal Publishing Service, and cf. cond-mat/9911344.
1999
  • P. V. Coveney and J. A. D. Wattis, "Cluster renormalization in the Becker-Döring equations," J. Phys. A: Math. Gen. 32, 7145 (1999); available as a PDF file (120 kB), and cf. cond-mat/9908402.
  • G. De Fabritiis, P. V. Coveney, and E. G. Flekkøy, "Multiscale modelling of complex fluids," Proceedings of the Fifth European SGI/Cray MPP Workshop, Bologna, Italy (1999); available as a gzipped PostScript file (124 kB).
  • E. G. Flekkøy and P. V. Coveney, "From molecular dynamics to dissipative particle dynamics," Phys. Rev. Lett. 83, 1775 (1999); available from the American Physical Society Online Journal Publishing Service, and cf. cond-mat/9908334.
  • R. J. Graham, R. T. Kroemer, M. Mons, E. G. Robertson, L. C. Snoek, and J. P. Simons, "Infrared ion dip spectroscopy of a Noradrenaline analogue: Hydrogen bonding in 2-Amino-1-phenylethanol and its singly hydrated complex," J. Phys. Chem. A 103, 9706 (1999); available from the American Chemical Society.
  • J. L. W. Griffin, P. V. Coveney, A. Whiting, and R. Davey, "Design and synthesis of macrocylic ligands for specific interaction with crystalline ettringite and demonstration of a viable mechanism for the setting of cement," J. Chem. Soc. Perkin Trans. II 10, 1973 (1999); available as a PDF file (1.0 GB).
  • R. T. Kroemer, "Molecular Modelling," B. Z. Chowdhry and S. E. Harding, eds., Protein-Ligand Interactions (IRL Press, New York, 1999).
  • J.-B. Maillet, V. Lachet, and P. V. Coveney, "Large scale molecular dynamics simulation of self-assembly processes in short and long chain cationic surfactants," Phys. Chem. Chem. Phys. 1, 5277 (1999); available as a PDF file (790 kB) from the Royal Society of Chemistry, and cf. cond-mat/9911013.
  • S. P. Newman, W. Jones, and P. V. Coveney, "Computer simulations of layered double hydroxides," P. A. Williams and A. Dyer, eds., Advances in Ion Exchange for Industry and Research, Proceedings of the Fifth International Conference on Ion Exchange Processes, 5-9 July 1998, NEWI, Wales (Royal Society of Chemistry, 1999).
  • P. Risthaus, D. Bosbach, P. V. Coveney, and A. Putnis, "Inhibition of barite and celestite growth with different phosphonates: A comparative AFM study," EUG 10, Strasbourg J. Conf. Abs. 4, 665 (1999).
  • J. A. D. Wattis and P. V. Coveney, "Mesoscopic models of nucleation and growth processes: A challenge to experiment," Phys. Chem. Chem. Phys. 1, 2163 (1999); available as a PDF file (230 kB) from the Royal Society of Chemistry.
  • J. A. D. Wattis and P. V. Coveney, "The origin of the RNA world: A kinetic model," J. Phys. Chem. B 103, 4231 (1999); available from the American Chemical Society.
  • S. J. Williams, P. V. Coveney, and W. Jones, "Molecular dynamics simulations of the swelling of terephthalate-containing anionic clays," Mol. Sim. 21, 183 (1999).